16 August, 2010

Review: The End of Incremental Evolution?

Accidental Origins (New Scientist 2751)

Yet another article has appeared but this time adding a rather different gloss to the usual consensus interpretation of Natural Selection, but instead of the usual cashing in on a world celebrated anniversary, this one does add something of real value.

In Accidental Origins published in a recent issue of New Scientist (2751), reporter Bob Holmes introduces us to Mark Pagel, who along with his colleagues, has uncovered a fatal flaw in the assumption of large numbers ofvery small, incremental steps which alone are supposed to deliver the crucial process of species change via Natural Selection. Though many others have questioned this tenet of Natural Selection, Pagel is different because he uses the same standpoint and methodology as his opponents to demolish their position. He uses a mathematical analysis of data derived from available evolutionary sequences to show that they could not have happened in the assumed way. But importantly, the significance of his results also, in fact, reaches well beyond Natural Selection to a whole range of “theories” based on the same sort of assumptions throughout present day Science, and so his contribution is significant for Science in general.

He reveals a significant hole in this form of explanation by showing that the concrete results do NOT have the actual “shape” that would be unavoidable from large numbers of small steps. Indeed, he goes on to demonstrate that the nearest idea that matches the analysis, is that species change is caused by a single accidental event rather than the assumed gradualist drift.

But, taking a step away from the individual problem Pagel addresses, we must more generally separate out quantitative derivation of formulae and its ability to accurately predict, from the usually following explanatory theory. Most scientists today feel that the initial stage is actually the “real nitty-gritty”, and the explanatory phase is merely some sort of rationalisation. Once a means of prediction is in their hands, the scientific process is presumed to be “complete”, and all sorts of questionable rationalisations are considered sufficient for the final “window-dressing”, explanatory phase. Returning to Pagel’s work, it is clear he has totally undermined this overall approach, at the same time as his contributions to Evolution, ALL other similar rationalisations in many other important areas of modern science must also be seen as subject to the same criticisms. The premise of vast interludes of time, and innumerable increments to totally alone produce ALL possible states can be demolished by such research as that delivered by Pagel. The flawed methodology is not a no-brainer, which everyone is bound to accept.

Indeed, many other scientists, including myself, have long disputed such forms of “explanation”, but our position has not been accepted as most cases were always completely beyond either experimental demolition or confirmation. Pagel’s method changes this seemingly permanent impasse, and such assumptions can be tested with certainty. Consider all the accepted methods, particularly in computer simulations, where, based upon “placeholder” theories, of the kind demolished here, involve similar thresholds, beyond which it is assumed that a new situation has been established (by incremental changes?), and new formulae can be employed. Such methods are now clearly revealed as cases with sufficient evidence for reliable data, yet having NO real Theory, and which therefore require invented, incremental-type placeholders which cannot be validated in the usual ways.

Mark Pagel (University of Reading) attempted to “quantify” species change by considering the effects of both random, incremental events and the time-gaps between adjacent species in an evident evolutionary sequence, BUT he came up with the result that the usual assumptions were inconsistent with the investigated data, and in considering a whole range of alternatives, the one that stood out as vastly more in tune with the data, was that only the emergence of a new species by a Single Accidental Event would do.

Now, as a scientist who cringes at the usual purely mathematical foundations for “theories” in much of modern science, I was primed to disagree with Pagel. But I was mistaken. He was using the science of Pure Form (Mathematics) as it should be used – to assess the formal implications of a methodology. His conclusions are formally unassailable!

But nevertheless, for my kind of Science, his revelations are only the beginning of absolutely necessary consequent scientific investigations.

NOTE: The criticised basic assumptions seem to be:-

1. That totally random and undirected accidents occur over vast periods of time, from which Natural Selection picks out only the most advantageous for continued survival.

2. And, that such increments can then gradually build up until a threshold is reached, beyondwhich a wholly new species (NOT a mere race or breed) is created.

The expression, “You cannot see the Wood for the Trees!” comes immediately to mind. A single isolated tree in an open space is a very different thing to one existing in established and continuing Woodland. The latter is part of a system working at a different level from the single tree. Component individual trees are different by being surrounded by other trees. In established Woodland, the growth patterns are very different, and the Wood affords a measure of protection too, while the involved ecological system is much richer there, so that all sorts of symbiotic and parasitic and even inter-species advantages can establish themselves. The question has to be asked, “Could the system of the Wood be determined solely by knowing about the properties of an individual, solitary tree?”And, of course, the same must also be true for other species of organisms. We cannot reduce their development and crucial change to incremental and undirected accident over vast periods of time.

Pagel’s work demolishes the usual placeholders, but the actual causal features of species-change are still requiring answers, which will NOT be solely formal, but will tackle exactly how such changes can occur; what is the biological content of species change? What significant qualitative events can deliver such innovation?

Now, to address this question, we must start by admitting that step-by-step selection does indeed take place, and can transform a species into a different Form – but that does NOT mean a switch to a different species: a Great Dane and a Chihuahua are still both just Dogs! The mechanism explains breeds but NOT speciation!

Something else must happen to result in what we correctly term a New Species: something which is NOT gradual and incremental, but immediate, qualitative & significant!

Now Pagel et al draw the conclusion that a single accidental event must be the cause, but that merely precipitates even bigger questions. What sort of single change could produce a new species at a single stroke? It must, surely, be impossible when seen as a single accidental mutation! We must replace both Pagel’s and the usual interpretation of such an “event” with something of an entirely different order.The Change must be brought about by a short but “revolutionary” Event, and such, of course, do indeed exist, and we have come to call them Emergences.

These cannot ONLY involve a single piece of genetic damage, which, by pure chance, causes sufficient changes to produce a wholly new and viable species. It must be some sort of general “system” change in which, in a relatively short period of time, via both avalanches of dissociation and swift erections of “the new”, produce, over a series of contained, see-sawing crises, a new synthesis, which is both viable and persists!

Now, such Events are not unknown! The greatest example of such occurrences must include the very first Star, then, much later, the Origin of Life itself, not to mention subsequent significant revolutions, such as those involving the birth of Consciousness, and that of Thinking too. Finally, such processes must even apply to Social Revolutions.

But such are not usually seriously addressed in academic circles. They are considered to be too much driven by ideological assumptions and indeed are often entirely discounted. But their reality is unanswerable by such purely prejudicial reasons for dismissal. The absolutely Key example of such a kind of revolutionary Event must be the Origin of Life on Earth from purely inanimate matter. And no-one could possibly put that down to a single accidental event, could they?

To respond to Pagel et al’s criticisms can only be addressed by a serious, scientific study of Emergences – the crucial, and indeed only, single events of qualitative change. Now, though these have NOT been pursued scientifically to any great degree to date, they have been available throughout history via fragmentary observations, artistic creations and persisting myths.

Around 2,500 years ago, two opposing, world-view conceptions were outlined almost simultaneously. These were Plurality and Holism.The former, concerned with seeing everything in terms of Wholes and their constituent Parts, was established in Ancient Greece, while the latter was formulated as a world view and guide to living for human beings by the Buddha – as “everything affects everything else” and “all is change” Nothing persists!” Thereafter, throughout the intervening period right up to the present day, many holistic gems were uncovered and delivered in sayings, stories, and many works of art, but it was not until Hegel (around 1800) that an attempt was made to formulise the study of Qualitative Change via his attempt to construct a “logic” of Change with his book The Science of Logic.

His main disciples, the Young Hegelians dramatically switched sides, not only abandoning Idealism for Materialism, but also by concentrating to a great extent on Social Change as their main purpose. Marx and his followers could not be stomached by the conservative occupiers of High Academia, and any serious research into Emergences and Qualitative Change was effectively deemed insupportable.

But, the wheel has turned full circle since that time, and Science is now constantly coming up against the contradictions inevitable from maintaining an entirely pluralist standpoint in a clearly holistic World. [The most significant and ever continuing crisis debilitating Modern Sub Atomic Physics is perhaps the clearest example, but many other cases with the same causes abound in many diverse areas of study].

Even from the very heart of Academia, scientists such as Murray Gell-Man have proposed the task of addressing Emergences, and the famed Santa Fe Institute was established with that as its main purpose. But, even the giants involved there could not negate what they and their predecessors had constructed over the last century, and their unbreakable marriage to Plurality has made any real progress impossible, and the purpose of the Institute has now shrunk into investigating yet another branch of Mathematics ONLY! Such philosophically unsound bases, and purely maths-led “theorising” is incapable of addressing this crucial area, and the contributions from Santa Fe have been decidedly poor.

AS scientific method and explanation is increasingly replaced by pure Form equations, applicable only in pluralist-demanded Domains, these researchers find themselves incapable of transcending the contradictions they encounter on all sides, such that they are now major “tenets” for their position and are “worn as badges of honour and superiority over the rest of uncomprehending humanity. So, like Pagel, they find flaws, but can only replace them with other flaws, dictated by their increasingly redundant methodologies and world views.

The errors, though, frequently switch to the opposite end of the spectrum and the “containing Wood” may well be recognised, but only as a summation of isolated trees producing overall and average collective features with matching probabilities. Instead of real understanding and explanation, almost arbitrary quantifiable features are monitored for a dependable, recurring Value (at Transition), so that when it is surpassed, new laws are brought into play to replace those possible before the threshold. Clearly the passing of the value at the threshold does NOT cause the change over, but is merely yet another symptom of the process which really does bring about the changes. AND these are not a simple switch but a kind of system revolution, involving significant dissociations and re-associations – more of an Emergence indeed, than a single accidental event.

No real answers will be produced without a major renovation of the by-now ubiquitous pluralist and maths-led methodology, and the general acceptance of such apposition is clearly proved by the very language of almost all scientists. They talk of natural laws determining the nature and evolution of Reality, which is clearly an abandonment of Materialism. How can a disembodied formalism produce and then drive Reality? That is naked Idealism! Laws are produced BY Reality, which changes and evolves, so that new laws appear at each new emerging Level. The revolution of the Origin of Life on Earth generated via concrete Reality, a whole new world of laws – subsequently gathered together by Mankind as Biology! Were there any eternal biological laws “before Life”? Of course there wasn’t!

Now, this short paper is not mere kite-flying. The author – a physicist/mathematician, philosopher and teacher of 50 years experience, has been writing on these very matters for over 10 years and has, in the last 12months, described his conception of the Inner Trajectory of an Emergence, as the first step to a world-wide investigation into scientific method and the necessary formulation of an holistic alternative. Such a purpose has already produced a reformulation of Miller’s brilliant and holistic experiment into the Origin of Life. And this would itself begin to define a whole new approach to such questions, and lay the foundations for a Holistic Sc


Today we post our first review on the Shape Blog. I have been feverishly and regularly writing such responses to published materials for some time (mostly of articles in New Scientist Magazine), but what with the short time between consecutive issues of that publication (it's a weekly) and my own experience in writing to such tight schedules that have been the unavoidable case, that in spite of the quality being finally acceptable for publication, the "currency" has slipped much too much. By the time they were finished they were invariably too late to inform possible readers of the original stimuli for these responses.

But clearly until I can produce these reviews in good time and while the source is still "fresh", the increasing pile of offerings has remained in my out tray (but never left it).

It is clear that this apparent waste cannot be allowed to continue, so we are now going to publish most of our reviews even if they are a bit late to be current with the latest issue of New Scientist. And, on thinking about it, they will still be relevant to the issues which have dominated Science News and Comment for very extended periods. In fact some crucial arguments have been going on for many years.

Certainly, this first review will not be rendered passe by unavoidable delays. Pagel's contribution (revealed in yet another New Scientist article and addressed in our first review) has turned out to be an extremely significant contribution to criticising many of our basic assumptions with regards to Evolution. In fact at least four successive papers have already been produced by this author and Pagel's work is definitely undermining many sacred cows in this important area of study.

The paper I have decided to publish here as Review No. 1 is entitled The End of Incrementalist Evolution and it hopefully will get our readers thinking and perhaps get the relevant materials for themselves.

NB: The Special Issue of the Shape Journal on Emergences in Evolution is now at an advanced stage of preparation, and is likely to be the next one published. And in this proposed publication the relevance of Pagel's important contribution will be revealed in full along with a whole series of other related contributions from current publications.

11 August, 2010

Issue 12 of Shape

I will be posting some diagrams on Fuzzy Logic and Dichotomous trees in the next few days, for those interested in the paper on gleaning Coherence from Incomplete Sequences.

Akhenaten Design